H23LNBCXX_l01n01_bir_1228_pcontrolb_54.35100000043200.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_54.35100000043200.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	194097
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	16554	8.528725328057622	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGT	4144	2.1350149667434324	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCG	1079	0.5559076132037074	No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAAC	305	0.15713792588241962	No Hit
GAATGTAATGGAATGCAATGGAATCAAATGAACACGAATGGAATGGAATGT	233	0.12004307124788122	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	228	0.11746703967603826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTG	30	2.1561518E-6	45.000004	31
TGCCCAC	30	2.1561518E-6	45.000004	31
TCGGAGG	30	2.1561518E-6	45.000004	18
CATAGTG	30	2.1561518E-6	45.000004	39
TTGAACG	30	2.1561518E-6	45.000004	17
CGGAGGA	30	2.1561518E-6	45.000004	19
CCACAAC	20	7.018785E-4	45.0	8
GTCCTAC	20	7.018785E-4	45.0	40
GACGTGA	20	7.018785E-4	45.0	27
GGTCCTA	20	7.018785E-4	45.0	39
CTCCCCT	20	7.018785E-4	45.0	10
AGGGTAG	25	3.8787897E-5	45.0	33
GACCCCT	20	7.018785E-4	45.0	34
TTCCCCA	20	7.018785E-4	45.0	29
ACGTGAT	35	1.2049532E-7	45.0	20
AGACAGC	20	7.018785E-4	45.0	45
ATGACCG	25	3.8787897E-5	45.0	16
TCCCGAC	25	3.8787897E-5	45.0	43
GTCCCAC	20	7.018785E-4	45.0	9
TCCCCAT	25	3.8787897E-5	45.0	23