H23LNBCXX_l01n01_bir_1228_pcontrolb_40.35100000043039.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_40.35100000043039.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	165070
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCGTC	4904	2.9708608469134306	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCGT	1291	0.782092445629127	No Hit
GAATGGAATGGAGTGAAATAAACTCGAGTGGAATGGAATGGAATGGAATAG	463	0.2804870660931726	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCG	303	0.1835584903374326	No Hit
ATATACAACGACCACAGCAGTAAATGGAGATAGTTACTCTGTTGAAATGAC	247	0.1496334888229236	No Hit
GAGTACAATTAAGTTCAGTGTTACATCAGAGCCTACGATAAAATCGGCAAC	237	0.14357545283818987	No Hit
GCTTCAATCAATTGTTTCAGTTCTTCTTCTTTTGGCAAATACAGACGGTAT	223	0.1350942024595626	No Hit
ATGATGGGAGTATTTGCATAATGAAAAATGGCAAATGCCACAAATCAGGAA	178	0.10783304052826073	No Hit
TTCTGGAATAGAATGCAGAACCTATAGTGCACAATTAAAGATTCCTGAAGG	170	0.10298661174047373	No Hit
ATAGATGGATCAGCAATACCTGGAGAAACAAATAGTACCTATACAACCACA	167	0.1011692009450536	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCCCG	20	7.010831E-4	45.006363	33
GCGGTTC	20	7.010831E-4	45.006363	28
AGCCCTC	20	7.010831E-4	45.006363	23
ACCGAAA	20	7.010831E-4	45.006363	20
CGTAGAA	20	7.010831E-4	45.006363	27
GCCCTCT	20	7.010831E-4	45.006363	24
CGGGATA	20	7.010831E-4	45.006363	40
GCCTACG	25	3.8730133E-5	45.006363	31
CTCGAGT	50	2.1827873E-11	45.006363	23
GATTCGT	20	7.010831E-4	45.006363	41
ACCCCTC	20	7.010831E-4	45.006363	32
GCCGTTC	20	7.010831E-4	45.006363	17
ACCTTGG	25	3.8730133E-5	45.006363	27
CAGACGG	45	3.8016879E-10	45.006363	42
AAGTCCC	20	7.010831E-4	45.006363	32
CTATGCT	20	7.021309E-4	44.99273	10
AACCGGG	20	7.021309E-4	44.99273	6
CCGGGTG	20	7.021309E-4	44.99273	8
ACCGGGT	20	7.021309E-4	44.99273	7
GGCACTC	20	7.021309E-4	44.99273	8