H23LNBCXX_l01n01_bir_1228_pcontrolb_4.35100000042bc4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_4.35100000042bc4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	75967
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC	2779	3.6581673621440887	RNA PCR Primer, Index 27 (95% over 21bp)
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	218	0.28696670922900736	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGT	209	0.27511945976542446	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	191	0.2514249608382587	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	160	0.21061776824147327	No Hit
GAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	155	0.2040359629839272	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	149	0.196137796674872	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	140	0.1842905472112891	No Hit
GTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	129	0.16981057564468782	No Hit
TATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA	119	0.15664696512959575	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	115	0.15138152092355892	No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	114	0.15006515987204969	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	110	0.14479971566601288	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	103	0.13558518830544844	No Hit
GAGTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA	92	0.12110521673884714	No Hit
GTACGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	91	0.11978885568733792	No Hit
GGTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA	81	0.10662524517224585	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	415	39.578312	45
ATTGCTA	420	38.57143	31
GAATTGC	415	38.493973	29
CCCACGA	430	38.197674	19
TTGCTAT	425	38.117645	32
TGCTATC	425	38.117645	33
GCCCACG	435	37.75862	18
AATTGCT	435	37.75862	30
ATGCCGT	435	37.75862	44
CGAGACG	430	37.67442	23
GACGAAT	430	37.67442	26
ACGAATT	430	37.67442	27
TATCTCG	425	37.588234	36
GTATGCC	425	37.588234	42
CGAATTG	425	37.588234	28
TCGTATG	425	37.588234	40
CTATCTC	440	37.329544	35
CACGAGA	440	37.329544	21
TATGCCG	440	37.329544	43
ATCTCGT	430	37.15116	37