H23LNBCXX_l01n01_bir_1228_pcontrolb_38.35100000042ff7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_38.35100000042ff7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	233125
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCGTC	13157	5.643753351206434	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCGT	2137	0.9166756032171581	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGCGACCTATCTCGTATGCCG	653	0.2801072386058981	No Hit
GAAGCATTTGTTGTACTTGAGACTTCAATTCACGTGGAGAATCAACTTCAC	340	0.14584450402144772	No Hit
AATCAATATCACGTCACAGGTGTTGTTTGATTACATTTTACTGATCCCATC	272	0.11667560321715817	No Hit
AACACAAAGAGTTTTGAAAACATTTCGAAGTGGTTAAGAAACATTGAAGAG	251	0.10766756032171582	No Hit
CTGAAGATATGCTAAACATAACAACTCAATAGGTACTAATTTTGGCATCAG	248	0.10638069705093833	No Hit
GCTATAGTCTTCTAACAACAAACAACGATTTGTTTCACTATCGATAACACA	245	0.10509383378016085	No Hit
TAACATTTGTTCCCGCACAAATTGTAGTACTTGTAGAAGTAATTGAAACAC	243	0.10423592493297587	No Hit
AGACCAAATTGGAAAACAGCAAATGATCTCATGAACAGGTTCAACAATGAA	242	0.10380697050938338	No Hit
ATACAAGACAGAATGTGACTCACTTATTGATCAGTACGGGGTTGTTATCAT	234	0.10037533512064344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGAG	35	1.2050077E-7	45.00644	33
TGGAACG	35	1.2050077E-7	45.00644	2
ACGTGGA	35	1.2050077E-7	45.00644	32
GGAACGG	35	1.2050077E-7	45.00644	3
AACCGAG	20	7.016758E-4	45.006435	31
GGTAACG	25	3.877931E-5	45.006435	1
CGGTTAT	20	7.016758E-4	45.006435	34
AGGGTGC	20	7.016758E-4	45.006435	35
CGCCTTA	30	2.155908E-6	45.006435	28
GGCTTGC	30	2.155908E-6	45.006435	32
GAGCGGT	20	7.016758E-4	45.006435	31
CCGAGTG	20	7.016758E-4	45.006435	33
ACCAGTC	25	3.877931E-5	45.006435	28
CTCGACT	30	2.155908E-6	45.006435	34
GCGGAGC	20	7.016758E-4	45.006435	31
GGTCTTA	20	7.016758E-4	45.006435	1
TGGCTAA	25	3.877931E-5	45.006435	33
CCGTTTA	25	3.877931E-5	45.006435	26
CAGAGCG	20	7.016758E-4	45.006435	29
CGGAGCA	20	7.016758E-4	45.006435	32