H23LNBCXX_l01n01_bir_1228_pcontrolb_3.35100000042bab.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_3.35100000042bab.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	170092
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC	7360	4.327070056204877	RNA PCR Primer, Index 27 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGT	590	0.3468711050490323	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	321	0.18872139783176164	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	291	0.17108388401570915	No Hit
GAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	285	0.16755638125249864	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	266	0.1563859558356654	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCG	243	0.14286386191002517	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	231	0.13580885638360415	No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	226	0.1328692707475954	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	222	0.13051760223878842	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	200	0.11758342544034993	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	182	0.10700091715071844	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAACGC	35	1.1988959E-7	45.023247	3
ATGCCGT	820	0.0	40.881207	44
TAACGCA	50	1.0641088E-9	40.52092	4
TGCCGTC	830	0.0	40.38866	45
TATAACG	45	1.9030267E-8	40.02066	2
GACGAAT	855	0.0	38.68143	26
TCGTATG	870	0.0	38.531715	40
CACGAGA	880	0.0	38.349514	21
CCCACGA	880	0.0	38.349514	19
CGTATGC	875	0.0	38.31153	41
TATGCCG	875	0.0	38.31153	43
CTCGTAT	880	0.0	38.09385	39
CGAGACG	875	0.0	38.054405	23
CTATCTC	870	0.0	38.01451	35
TTGCTAT	860	0.0	37.93332	32
GCCCACG	890	0.0	37.918625	18
GTATGCC	885	0.0	37.878635	42
ACGAGAC	885	0.0	37.878635	22
TATCTCG	880	0.0	37.83819	36
AATTGCT	875	0.0	37.797283	30