H23LNBCXX_l01n01_bir_1228_pcontrolb_19.35100000042da9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_19.35100000042da9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	282646
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGTC	26653	9.42981680264359	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCGT	5214	1.844710344388387	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAGATCCTATCTCGTATGCCG	1253	0.44331071375501513	No Hit
CTATACACATCTTTGAGTAAATGATGGACAATACATGAAGTACTACTAGAC	314	0.11109302802799262	No Hit
TATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACA	314	0.11109302802799262	No Hit
CTTTTAATCTCTCATGTACCATTATTCCATGTACCTTCTGTCTCTTATACA	288	0.10189424226771297	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGAC	20	7.0137734E-4	45.01363	6
CGATCAA	20	7.0137734E-4	45.01363	2
TCGCAGA	20	7.026016E-4	44.997704	35
ACACGCA	20	7.026016E-4	44.997704	18
TGCTTCG	20	7.026016E-4	44.997704	25
ACGTTCA	20	7.026016E-4	44.997704	35
CGACATG	20	7.026016E-4	44.997704	29
TACGGAT	20	7.026016E-4	44.997704	30
CCGTAAA	20	7.026016E-4	44.997704	22
GCTTCGA	20	7.026016E-4	44.997704	26
AGTTGCG	20	7.026016E-4	44.997704	10
TACGACC	20	7.026016E-4	44.997704	7
GTTCAGC	20	7.026016E-4	44.997704	28
CGACTTA	20	7.026016E-4	44.997704	40
GTGACTC	20	7.026016E-4	44.997704	15
CCTGAAT	20	7.026016E-4	44.997704	11
GCCGTCT	20	7.026016E-4	44.997704	45
ATCGCAG	20	7.026016E-4	44.997704	34
ACGACCC	20	7.026016E-4	44.997704	8
TACCGTG	20	7.026016E-4	44.997704	20