H23LNBCXX_l01n01_bir_1228_pb_95.35100000042b31.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pb_95.35100000042b31.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8286
Sequences flagged as poor quality	0
Sequence length	51
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTC	2009	24.24571566497707	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGT	188	2.2688872797489745	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCG	57	0.6879073135409124	No Hit
ATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTCTTC	27	0.3258508327299059	TruSeq Adapter, Index 4 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACCATCAGCATCTCGTATGCCGTCT	13	0.1568911416847695	RNA PCR Primer, Index 18 (95% over 21bp)
TATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTCTT	9	0.10861694424330195	RNA PCR Primer, Index 4 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTCT	9	0.10861694424330195	RNA PCR Primer, Index 36 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCATCAGCATCTCGTATGCCGTC	9	0.10861694424330195	RNA PCR Primer, Index 26 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	250	42.300003	45
ATGCCGT	265	39.905663	44
ATCTCCG	270	38.333332	10
GCAGCAA	270	38.333332	31
TCCGAGC	270	38.333332	13
AGACCAG	265	38.207546	25
GACCAGC	265	38.207546	26
ACCAGCA	265	38.207546	27
GTATGCC	280	37.767857	42
ATCTCGT	280	37.767857	37
TATGCCG	280	37.767857	43
TCTCGTA	280	37.767857	38
CTCGTAT	280	37.767857	39
AGCCCAC	275	37.636364	17
AATCTCG	275	37.636364	36
CACATCT	275	37.636364	7
GCCCACG	275	37.636364	18
CCAGCAG	275	37.636364	28
CCACGAG	275	37.636364	20
CATCTCC	275	37.636364	9