H23LNBCXX_l01n01_bir_1228_pb_40.35100000042452.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pb_40.35100000042452.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	121301
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGTC	29492	24.313072439633636	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCG	10662	8.789704948846259	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGT	9424	7.769103305001608	No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGC	409	0.33717776440425057	No Hit
GATGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTC	157	0.12943009538256076	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTATGA	30	2.1449468E-6	45.013607	26
TCCCCTA	20	6.9978903E-4	45.013607	32
AGCTATG	30	2.1449468E-6	45.013607	25
CCATAAC	20	7.012129E-4	44.995056	13
TGCCGTC	3030	0.0	44.475307	45
TATTTAC	30	1.13464695E-4	37.49588	3
ACGTGTT	30	1.13464695E-4	37.49588	8
CGTGTTC	30	1.13464695E-4	37.49588	9
TACGTGT	30	1.13464695E-4	37.49588	7
TTATGGA	25	0.0021008356	35.996044	15
TTGTCTG	25	0.0021008356	35.996044	22
AATACCC	25	0.0021008356	35.996044	43
ATGCCGT	3935	0.0	34.189377	44
TTACGTG	35	2.8074352E-4	32.139324	6
GCCGTCT	35	2.8074352E-4	32.139324	45
CAGCTAT	45	3.4582783E-5	30.00907	24
AGACTGC	30	0.005132096	29.996702	6
CCAATCC	30	0.005132096	29.996702	19
TCGAAGC	30	0.005132096	29.996702	13
CTTACAG	30	0.005132096	29.996702	3