H23LNBCXX_l01n01_bir_1228_pb_23.3510000004222d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pb_23.3510000004222d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	148918
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCGTC	23275	15.629406787628092	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCGT	8682	5.830054123745954	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCG	7382	4.957090479324192	No Hit
TGTCTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCC	206	0.13833116211606386	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACA	186	0.12490095220188291	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATGTC	25	3.8692873E-5	45.01008	5
AGCGTAT	25	3.8769747E-5	44.994965	17
AAGCGTA	25	3.8769747E-5	44.994965	16
GCGTATT	25	3.8769747E-5	44.994965	18
CCTGGAT	20	7.0173683E-4	44.99496	8
TGCCGTC	2460	0.0	43.71462	45
TCCGATG	35	6.2021754E-6	38.580067	3
CCGATGT	30	1.1336591E-4	37.5084	4
CGATTAT	30	1.1336591E-4	37.5084	29
GGGCGAT	30	1.1336591E-4	37.5084	26
GCGATTA	30	1.1336591E-4	37.5084	28
TGGGGCG	30	1.1359043E-4	37.495804	24
CGAAGCG	30	1.1359043E-4	37.495804	14
GGGGCGA	30	1.1359043E-4	37.495804	25
TAGTAGC	25	0.0020989259	36.00806	4
CCCTGTT	25	0.0021023906	35.99597	45
CCGTCTT	70	2.0008883E-11	35.353188	17
GCCGTCT	70	2.0008883E-11	35.353188	16
CTTCCGA	40	1.5455551E-5	33.7689	1
CTATTAA	35	2.799457E-4	32.160862	1