H23LNBCXX_l01n01_bir_1228_pa_38.3510000004181d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pa_38.3510000004181d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	243492
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGTC	65698	26.981584610582686	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGT	34692	14.24769602286728	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCG	10858	4.4592840832553025	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACA	772	0.3170535376932302	No Hit
TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTT	581	0.23861153549192582	No Hit
CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAA	451	0.18522169106171865	No Hit
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGT	316	0.12977839107650355	No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAAC	301	0.12361802441147965	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTGCG	20	7.022323E-4	45.0	7
TGCCGTC	6730	0.0	44.765976	45
GCCGTCT	40	3.4432742E-7	39.375	45
GACAGCC	55	1.1215161E-7	32.727276	10
GAGCTCG	55	1.1215161E-7	32.727276	9
TGAGCTC	55	1.1215161E-7	32.727276	8
GGGACAC	50	1.9731488E-6	31.5	27
GGGCGGG	50	1.9731488E-6	31.5	23
GCGGGAC	50	1.9731488E-6	31.5	25
GGCGGGA	50	1.9731488E-6	31.5	24
AGCTCGA	50	1.9731488E-6	31.5	10
GGACACG	50	1.9731488E-6	31.5	28
AGGGCGG	50	1.9731488E-6	31.5	22
CGCTGAA	30	0.0051393854	30.000002	27
TATGAGA	30	0.0051393854	30.000002	2
GCACATA	60	2.4057408E-7	30.000002	31
TGTTATC	30	0.0051393854	30.000002	2
ATGCCGT	10415	0.0	28.948633	44
GTAGGGC	55	4.1472376E-6	28.636366	20
ATGAGTA	55	4.1472376E-6	28.636366	16