H23LNBCXX_l01n01_bir_1228_pa_30.3510000004171e.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pa_30.3510000004171e.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405806
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCGTC	20538	5.061039018644377	RNA PCR Primer, Index 13 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCGT	7996	1.9703996490934093	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCG	3321	0.8183713399999013	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACA	813	0.2003420353567961	No Hit
TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTT	551	0.13577916541401555	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCC	421	0.10374415361034584	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	2075	0.0	44.348793	45
GGGGCGA	30	1.1387127E-4	37.499485	8
TTGTCGC	25	0.0021056472	35.999508	19
CCGGGAT	35	2.817409E-4	32.142418	11
GGGCGAA	35	2.817409E-4	32.142418	9
CACCGGG	35	2.817409E-4	32.142418	9
ATGCCGT	2885	0.0	31.897308	44
TACCCAG	30	0.005143726	29.99959	5
ACCGCGA	45	3.4856646E-5	29.999588	8
TACCGCG	45	3.4856646E-5	29.999588	7
TATGCCG	3215	0.0	28.623247	43
CGTATGC	3210	0.0	28.527647	41
TCGTATG	3210	0.0	28.457554	40
CTCGTAT	3235	0.0	28.376738	39
GTATGCC	3245	0.0	28.28929	42
AGGGGCG	40	6.159709E-4	28.124615	7
TCTCGTA	3290	0.0	27.902353	38
GACCTAT	3260	0.0	27.814037	26
CCTATTC	3255	0.0	27.787638	28
AATCTCG	3275	0.0	27.755344	36