H23LNBCXX_l01n01_bir_0120_pe_90.35100000047260.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0120_pe_90.35100000047260.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60216
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTC	18365	30.498538594393516	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGT	1572	2.6106018333997607	No Hit
ATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCTTC	710	1.179088614321775	TruSeq Adapter, Index 7 (95% over 22bp)
TTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCT	595	0.9881094725654311	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCG	413	0.6858642221336522	No Hit
TATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCTT	229	0.38029759532350205	RNA PCR Primer, Index 7 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCG	74	0.1228909259997343	No Hit
CTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCT	63	0.10462335591869272	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTTC	95	42.63158	45
TGCCGTC	2140	41.004677	45
ATGCCGT	2295	38.235294	44
TCCGAGC	2335	37.580303	13
CCCACGA	2330	37.564377	19
AGACCTA	2345	37.51599	25
CCACGAG	2345	37.51599	20
CGAGCCC	2340	37.5	15
GCCCACG	2335	37.483944	18
AGCCCAC	2335	37.483944	17
GTTCATC	2330	37.46781	33
GACCTAG	2330	37.46781	26
ACCTAGG	2325	37.451614	27
CTCCGAG	2350	37.436172	12
GAGACCT	2350	37.436172	24
TAGGTTC	2320	37.43535	30
AGGTTCA	2320	37.43535	31
GAGCCCA	2345	37.420044	16
TATGCCG	2340	37.403847	43
GTATGCC	2340	37.403847	42