H23LNBCXX_l01n01_bir_0120_pe_9.3510000004686d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0120_pe_9.3510000004686d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13560
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACGGCTGCATCTCGTATGCCGTC	3506	25.855457227138643	TruSeq Adapter, Index 11 (95% over 24bp)
TCTTATACACATCTCCGAGCCCACGAGACACGGCTGCATCTCGTATGCCGT	316	2.3303834808259585	TruSeq Adapter, Index 11 (95% over 23bp)
TTATACACATCTCCGAGCCCACGAGACACGGCTGCATCTCGTATGCCGTCT	124	0.9144542772861357	TruSeq Adapter, Index 11 (96% over 25bp)
ATACACATCTCCGAGCCCACGAGACACGGCTGCATCTCGTATGCCGTCTTC	117	0.8628318584070797	TruSeq Adapter, Index 11 (96% over 27bp)
CTCTTATACACATCTCCGAGCCCACGAGACACGGCTGCATCTCGTATGCCG	93	0.6858407079646017	RNA PCR Primer, Index 11 (95% over 22bp)
TATACACATCTCCGAGCCCACGAGACACGGCTGCATCTCGTATGCCGTCTT	32	0.2359882005899705	RNA PCR Primer, Index 11 (96% over 26bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	445	0.0	40.44944	45
ATGCCGT	495	0.0	36.36364	44
CGTCTTC	25	0.0020346292	36.0	45
GCTGCAT	515	0.0	35.388348	32
CTGCATC	515	0.0	35.388348	33
TCTCGTA	510	0.0	35.294117	38
GCATCTC	510	0.0	35.294117	35
GAGACAC	525	0.0	35.142857	24
AGCCCAC	520	0.0	35.048077	17
ACACGGC	520	0.0	35.048077	27
TGCATCT	520	0.0	35.048077	34
GCCCACG	520	0.0	35.048077	18
CCACGAG	520	0.0	35.048077	20
CACGAGA	520	0.0	35.048077	21
GGCTGCA	520	0.0	35.048077	31
CCCACGA	520	0.0	35.048077	19
GACACGG	520	0.0	35.048077	26
ACGAGAC	520	0.0	35.048077	22
CGAGCCC	520	0.0	35.048077	15
CCGAGCC	520	0.0	35.048077	14