H23LNBCXX_l01n01_bir_0120_pe_81.35100000047155.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0120_pe_81.35100000047155.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24871
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTC	7285	29.29114229423827	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGT	653	2.625547826786217	No Hit
TTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCT	213	0.8564191226729927	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCG	175	0.703630734590487	No Hit
ATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCTTC	83	0.3337220055486309	TruSeq Adapter, Index 9 (95% over 22bp)
TATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCTT	38	0.15278838808250572	RNA PCR Primer, Index 9 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	770	41.493507	45
ATGCCGT	870	36.982758	44
CGTATGC	925	35.027027	41
CTCGTAT	925	35.027027	39
GTATGCC	920	34.972824	42
TCTCGTA	920	34.972824	38
GATCTCG	915	34.918034	36
GAGCCCA	930	34.83871	16
TCGTATG	930	34.83871	40
ATCTCGT	925	34.783783	37
TATGCCG	925	34.783783	43
CCACGAG	920	34.72826	20
CACGAGA	920	34.72826	21
GAGTTAG	920	34.72826	30
ACGAGAC	920	34.72826	22
TAGATCT	920	34.72826	34
GAGACCG	920	34.72826	24
CGAGACC	915	34.67213	23
CCGAGCC	935	34.652405	14
AGCCCAC	930	34.596775	17