H23LNBCXX_l01n01_bir_0120_pe_57.35100000046e5b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0120_pe_57.35100000046e5b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	181021
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCGTC	25215	13.929323117207396	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCGT	5741	3.1714552455239997	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCG	887	0.4899983979759255	No Hit
TTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCGTCT	688	0.38006640113577983	No Hit
ATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCGTCTTC	193	0.10661746427210103	RNA PCR Primer, Index 20 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTGGTC	20	7.017953E-4	44.999447	25
AGCCAAC	20	7.017953E-4	44.999447	16
GCTTAAT	20	7.017953E-4	44.999447	2
CCTGCTA	20	7.017953E-4	44.999447	4
GCGTACC	20	7.017953E-4	44.999447	33
TGCGTAC	20	7.017953E-4	44.999447	32
TGCCGTC	2760	0.0	42.309265	45
GCCGTCT	160	0.0	36.56205	45
GATCACC	25	0.002102558	35.99956	9
CTGGTCT	25	0.002102558	35.99956	26
TCATGCG	25	0.002102558	35.99956	29
AACTGAG	25	0.002102558	35.99956	7
CGTACCA	25	0.002102558	35.99956	34
ATGCGTA	25	0.002102558	35.99956	31
GCCAACA	25	0.002102558	35.99956	17
CACCCAC	25	0.002102558	35.99956	12
ATGCCGT	3355	0.0	34.805832	44
CTCGTAT	3490	0.0	33.330536	39
CACGAGA	3540	0.0	33.304676	21
ACGAGAC	3540	0.0	33.304676	22