H23LNBCXX_l01n01_bir_0120_pe_35.35100000046b91.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0120_pe_35.35100000046b91.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	157245
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCGTC	22767	14.478679767242204	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCGT	6998	4.4503799802855415	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCG	665	0.42290692867817736	No Hit
TTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCGTCT	572	0.36376355369010144	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	226	0.1437247607237114	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	199	0.12655410346910873	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	198	0.1259181532004197	No Hit
AAAAAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGC	169	0.10747559540843907	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	2370	0.0	43.19437	45
GGGAGCA	30	1.13572816E-4	37.49841	17
GGAGTTG	25	0.0020987478	36.00993	3
CCCTAGA	25	0.002102029	35.998474	32
GCCGTCT	105	0.0	34.28426	45
ATGCCGT	3080	0.0	33.310276	44
GATCTCG	3125	0.0	32.614616	36
TCTCGTA	3130	0.0	32.56252	38
CTCGTAT	3140	0.0	32.530468	39
CGGCATA	3150	0.0	32.49862	28
CGTATGC	3165	0.0	32.486774	41
ATAGGAT	3145	0.0	32.478752	32
AGACGGC	3160	0.0	32.46698	25
GTATGCC	3160	0.0	32.46698	42
GACGGCA	3160	0.0	32.46698	26
GAGACGG	3155	0.0	32.44712	24
ACGGCAT	3155	0.0	32.44712	27
CGAGACG	3155	0.0	32.44712	23
GCATAGG	3155	0.0	32.44712	30
ACGAGAC	3170	0.0	32.435535	22