H23LNBCXX_l01n01_bir_0120_pe_31.35100000046b27.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0120_pe_31.35100000046b27.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	325850
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGTGTGCATCTCGTATGCCGTC	23179	7.113395734233544	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGTGTGCATCTCGTATGCCGT	3266	1.0023016725487186	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	736	0.22587079944759858	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCGTGTGCATCTCGTATGCCG	676	0.2074574190578487	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	606	0.18597514193647385	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	563	0.1727788859904864	No Hit
AAAAAAAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGA	532	0.163265306122449	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	512	0.15712751265919903	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	483	0.1482277121374866	No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	453	0.13902102194261165	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTCTGTCTCTTATACACATCTCCGA	450	0.13810035292312414	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	440	0.13503145619149914	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	437	0.13411078717201166	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	389	0.11938008286021176	No Hit
TTATACACATCTCCGAGCCCACGAGACTCGTGTGCATCTCGTATGCCGTCT	387	0.11876630351388676	No Hit
GGTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCA	366	0.1123216203774743	No Hit
AAAAAGTACTCTGCGTTGATACCCCGTACTCTGCGTTGATACCTGTCTCTT	363	0.1114009513579868	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	350	0.10741138560687433	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACATCG	25	3.886043E-5	44.997234	5
TGCCGTC	2350	0.0	43.561157	45
ATGCCGT	2625	0.0	38.826187	44
AGACTCG	2715	0.0	37.462013	25
GTATGCC	2715	0.0	37.462013	42
GCATCTC	2685	0.0	37.455803	35
CGTATGC	2710	0.0	37.448097	41
CTCGTAT	2705	0.0	37.43413	39
GACTCGT	2720	0.0	37.393147	26
TATGCCG	2730	0.0	37.3386	43
GTGCATC	2695	0.0	37.322544	33
ACTCGTG	2710	0.0	37.282032	27
CGAGACT	2740	0.0	37.278736	23
TCGTGTG	2695	0.0	37.23905	29
CACGAGA	2750	0.0	37.22499	21
ACGAGAC	2750	0.0	37.22499	22
CTCGTGT	2715	0.0	37.21337	28
CATCTCG	2715	0.0	37.20766	36
ATCTCGT	2730	0.0	37.17375	37
TCTCGTA	2720	0.0	37.144962	38