H23LNBCXX_l01n01_bir_0120_pd_41.35100000046065.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0120_pd_41.35100000046065.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	141684
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTC	34668	24.468535614465996	RNA PCR Primer, Index 46 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGT	12927	9.123824849665453	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCG	1465	1.0339911352022813	No Hit
TTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCT	809	0.5709889613506113	RNA PCR Primer, Index 18 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCGTCTTC	183	0.1291606674006945	RNA PCR Primer, Index 46 (95% over 24bp)
TCTTTATACACATCTCCGAGCCCACGAGACCATTCCGAATCTCGTATGCCG	146	0.10304621552186556	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	3800	43.21894	45
ATGCCGT	5095	32.233948	44
ATTCCGA	5265	31.278616	30
CATTCCG	5280	31.232365	29
ACGAGAC	5300	31.199402	22
TTCCGAA	5265	31.193153	31
TATGCCG	5265	31.193153	43
GACCATT	5310	31.183018	26
TCCGAGC	5285	31.16025	13
CACGAGA	5300	31.156954	21
CCGAGCC	5300	31.156954	14
GAGACCA	5330	31.150425	24
CTCGTAT	5265	31.150423	39
TCTCGTA	5265	31.150423	38
CCCACGA	5290	31.130795	19
AGACCAT	5335	31.12123	25
AATCTCG	5270	31.12087	36
AGCCCAC	5300	31.114506	17
CCACGAG	5300	31.114506	20
CGAGACC	5315	31.111353	23