H23LNBCXX_l01n01_bir_0113_pc_89.35100000045a53.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_89.35100000045a53.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19694
Sequences flagged as poor quality	0
Sequence length	51
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	7011	35.59967502792728	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGT	603	3.061846247588098	RNA PCR Primer, Index 41 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	189	0.9596831522291053	No Hit
TTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	154	0.7819640499644561	RNA PCR Primer, Index 41 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTTC	33	0.16756372499238348	RNA PCR Primer, Index 34 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	800	43.593754	45
ATGCCGT	880	39.63068	44
CGAGCCC	915	38.360657	15
AGCCCAC	910	38.324173	17
GTATGCC	910	38.324173	42
GCCCACG	910	38.324173	18
CCACGAG	910	38.324173	20
TATGCCG	910	38.324173	43
GAGCCCA	910	38.324173	16
CACGAGA	910	38.324173	21
CCCACGA	910	38.324173	19
ACGAGAC	910	38.324173	22
CCGAGCC	910	38.324173	14
TCTCCGA	910	38.324173	11
CGAGACT	910	38.324173	23
GAGACTC	910	38.324173	24
CTCCGAG	910	38.324173	12
CGTATGC	905	38.28729	41
TCGTATG	905	38.28729	40
CTCGTAT	905	38.28729	39