H23LNBCXX_l01n01_bir_0113_pc_88.35100000045a46.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_88.35100000045a46.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49855
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAAGCATGATCTCGTATGCCGTC	2340	4.69361147327249	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAAGCATGATCTCGTATGCCGT	291	0.5836927088556815	No Hit
TTATACACATCTCCGAGCCCACGAGACTAAGCATGATCTCGTATGCCGTCT	268	0.5375589208705245	No Hit
TGAACCTGATAATGGAATTGATACGGCTTATTATTCTGGACTTAGATTTGT	235	0.47136696419616886	No Hit
ATACACATCTCCGAGCCCACGAGACTAAGCATGATCTCGTATGCCGTCTTC	155	0.3109016146825795	Illumina PCR Primer Index 1 (95% over 22bp)
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGGC	105	0.21061077123658611	No Hit
TATACACATCTCCGAGCCCACGAGACTAAGCATGATCTCGTATGCCGTCTT	63	0.12636646274195165	Illumina PCR Primer Index 1 (95% over 21bp)
ATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGAT	53	0.106308294052753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGAACCT	20	6.968473E-4	45.0	1
TACGGCT	20	6.968473E-4	45.0	22
GGCTTAT	20	6.968473E-4	45.0	25
CTTATTA	20	6.968473E-4	45.0	27
CGGCTTA	20	6.968473E-4	45.0	24
ATACGGC	25	3.8371843E-5	45.0	21
TCTGGAC	25	3.8371843E-5	45.0	35
TGATAAT	30	1.1243322E-4	37.500004	7
GATTTGT	30	1.1243322E-4	37.500004	45
AATTGAT	30	1.1243322E-4	37.500004	16
ATTATTC	30	1.1243322E-4	37.500004	30
GAATTGA	30	1.1243322E-4	37.500004	15
CTGATAA	30	1.1243322E-4	37.500004	6
CCTGATA	30	1.1243322E-4	37.500004	5
ACTTAGA	25	0.0020878722	36.0	40
GACTTAG	25	0.0020878722	36.0	39
ACGGCTT	25	0.0020878722	36.0	23
AACCTGA	25	0.0020878722	36.0	3
GAACCTG	25	0.0020878722	36.0	2
CTTAGAT	25	0.0020878722	36.0	41