H23LNBCXX_l01n01_bir_0113_pc_8.35100000045033.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_8.35100000045033.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46295
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTC	6942	14.99513986391619	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGT	499	1.0778701803650501	RNA PCR Primer, Index 44 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCT	374	0.8078626201533643	RNA PCR Primer, Index 44 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCTTC	268	0.5788962090938546	RNA PCR Primer, Index 37 (95% over 23bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	162	0.349929798034345	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCG	132	0.28512798358354036	No Hit
GTACGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA	126	0.2721676206933794	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	100	0.21600604816934874	No Hit
TATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCTT	99	0.21384598768765523	RNA PCR Primer, Index 37 (95% over 22bp)
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	94	0.20304568527918782	No Hit
CCACTGCTTCCCGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCG	59	0.12744356841991575	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	56	0.12096338697483529	No Hit
AAAAAGTACTCTGCGTTGATACCACCTGTCTCTTATACACATCTCCGAGCC	51	0.11016308456636785	No Hit
CCACTGCTTCCCGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCC	51	0.11016308456636785	No Hit
GTATCAACGCAGAGTACGGGAAGCAGTGGCTGTCTCTTATACACATCTCCG	49	0.10584296360298087	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCTT	45	1.8604624E-8	40.0	44
CGTCTTC	45	1.8604624E-8	40.0	45
TGCCGTC	805	0.0	38.85093	45
ATGCCGT	810	0.0	38.61111	44
TATGCCG	840	0.0	37.232143	43
GTATGCC	845	0.0	37.011833	42
AGAATAT	845	0.0	37.011833	32
ACCCTAG	845	0.0	37.011833	27
GACCCTA	845	0.0	37.011833	26
CCTAGAA	845	0.0	37.011833	29
TAGAATA	845	0.0	37.011833	31
TCTCGTA	840	0.0	36.964287	38
TCGTATG	840	0.0	36.964287	40
ATATCTC	840	0.0	36.964287	35
CTCGTAT	840	0.0	36.964287	39
CCACGAG	850	0.0	36.794117	20
CACGAGA	850	0.0	36.794117	21
ACGAGAC	850	0.0	36.794117	22
CGTATGC	850	0.0	36.794117	41
CTAGAAT	850	0.0	36.794117	30