H23LNBCXX_l01n01_bir_0113_pc_73.35100000045855.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_73.35100000045855.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	42547
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTC	12633	29.691870167109315	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGT	1199	2.818060027734035	No Hit
TTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCT	359	0.8437727689378804	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCG	298	0.7004019084776835	No Hit
ATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCTTC	267	0.6275413072602064	Illumina PCR Primer Index 7 (95% over 22bp)
TATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCTT	112	0.26323830117282065	Illumina PCR Primer Index 7 (95% over 21bp)
ATTGTAGCTTTTCTCCTCTTAAAAAACAACCTAAGAAACCAAAATTCCTCT	94	0.22093214562718877	No Hit
ATTTGATTCGATTCGATCATTTGGATTCAATTTGTTACATTTCGATTCGAT	48	0.11281641478835172	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTC	30	2.1163924E-6	44.999996	45
TGCCGTC	1430	0.0	41.695805	45
ATGCCGT	1520	0.0	39.226974	44
AGCCCAC	1560	0.0	38.365383	17
GCCCACG	1560	0.0	38.365383	18
CACGAGA	1560	0.0	38.365383	21
CGTATGC	1555	0.0	38.34405	41
AGACTCT	1555	0.0	38.34405	25
CTCGTAT	1555	0.0	38.34405	39
TCGTATG	1550	0.0	38.322582	40
GGACCAT	1545	0.0	38.300972	32
GACCATC	1545	0.0	38.300972	33
ATCTCGT	1540	0.0	38.27922	37
CATCTCG	1540	0.0	38.27922	36
TCTCGTA	1540	0.0	38.27922	38
CCCACGA	1565	0.0	38.242813	19
CTGGACC	1565	0.0	38.242813	30
TGGACCA	1565	0.0	38.242813	31
CTCTGGA	1560	0.0	38.221153	28
GTATGCC	1560	0.0	38.221153	42