H23LNBCXX_l01n01_bir_0113_pc_61.351000000456ea.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_61.351000000456ea.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	131053
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	1948	1.4864215241161973	RNA PCR Primer, Index 39 (95% over 21bp)
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCG	261	0.19915606662953156	No Hit
GTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTC	197	0.15032086255179203	No Hit
GTGCCCAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAA	195	0.14879476242436268	No Hit
CTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTA	166	0.12666631057663694	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	146	0.11140530930234332	No Hit
GGGTAAAGCCAGAGGAAACTCTGGTGGAAGCCCGCAGCGATACTGACGTGC	132	0.10072260841033781	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTGTTA	195	0.0	40.38256	27
TCGTATG	190	0.0	40.261112	40
TATACAT	190	0.0	40.261112	32
TATGCCG	185	0.0	40.13309	43
CGTATGC	195	0.0	39.228775	41
GTTATAC	195	0.0	39.228775	30
ATCTCGT	190	0.0	39.07696	37
ATGCCGT	190	0.0	39.07696	44
TACCCGG	35	6.1919327E-6	38.58419	6
ACCTATA	35	6.1919327E-6	38.58419	1
ATACCCG	35	6.1919327E-6	38.58419	5
CGTCGGG	35	6.2081926E-6	38.56947	14
TGTTATA	205	0.0	38.412678	29
GTATGCC	195	0.0	38.07499	42
ATACATC	195	0.0	38.07499	33
GCCCACG	210	0.0	37.498093	18
CATCTCG	205	0.0	37.315174	36
CACGAGA	215	0.0	36.62604	21
CCCACGA	215	0.0	36.62604	19
CGAGACT	215	0.0	36.62604	23