H23LNBCXX_l01n01_bir_0113_pc_58.3510000004568d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_58.3510000004568d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	299446
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	4986	1.6650748382012117	RNA PCR Primer, Index 39 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	1662	0.5550249460670705	No Hit
CCTTAATCCTGTCCATTACTCCTTGATTCTCTTCTTCCACTGTTTTCACAT	688	0.2297576190698824	No Hit
GAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCT	442	0.14760591225129072	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTA	440	0.146938012195855	No Hit
GGTGAAGACGGTGAGAAGAAGAAGAAGGAGAAAAAGAAGAAGATTGTTGAA	385	0.12857076067137313	No Hit
GTTTTCACATGATCTCCTTCAACAATCTTCTTCTTTTTCTCCTTCTTCTTC	372	0.12422941031104105	No Hit
GTCCATTACTCCTTGATTCTCTTCTTCCACTGTTTTCACATGATCTCCTTC	348	0.1162146096458126	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCG	305	0.10185475845394494	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCCATC	30	2.1620945E-6	44.993988	7
TGCCGTC	605	0.0	42.391033	45
GGCTAGT	40	3.4459117E-7	39.376316	23
AAGCGCC	40	1.5528156E-5	33.762405	4
GGGCTAG	40	1.5581538E-5	33.74549	22
GCCATCC	40	1.5581538E-5	33.74549	8
ATGCCGT	805	0.0	31.859097	44
CGTATGC	830	0.0	30.628439	41
TATGCCG	830	0.0	30.628439	43
CATCTCG	835	0.0	30.175608	36
ATAGGTG	30	0.005132017	30.011026	3
GCGCCAT	45	3.477553E-5	30.006014	6
AGCGCCA	45	3.477553E-5	30.006014	5
AGCATGG	30	0.005144611	29.995993	10
GGGGCTA	45	3.4854955E-5	29.99599	21
CTCGTAT	850	0.0	29.90777	39
GTATGCC	850	0.0	29.90777	42
GTTATAC	860	0.0	29.56494	30
TCGTATG	865	0.0	29.389135	40
TCTCGTA	860	0.0	29.298409	38