H23LNBCXX_l01n01_bir_0113_pc_42.35100000045472.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_42.35100000045472.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	296856
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGTC	3977	1.3397067938663865	RNA PCR Primer, Index 20 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGT	1248	0.42040585334303504	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTA	325	0.1094806909747487	No Hit
CCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATG	325	0.1094806909747487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	415	0.0	42.829082	45
CGGTCCA	30	1.1382339E-4	37.498035	28
CGCGTCG	30	1.1382339E-4	37.498035	23
CATACCG	25	0.0021016595	36.010242	5
AGGCCGC	35	2.8106742E-4	32.152004	6
TAGGCCG	35	2.8106742E-4	32.152004	5
ACGCCCC	35	2.816238E-4	32.14117	34
ATCCGCG	35	2.816238E-4	32.14117	20
CGATCGG	35	2.816238E-4	32.14117	45
CCACGCC	35	2.816238E-4	32.14117	32
ATGCCGT	570	0.0	31.182577	44
ACACTAT	45	3.4754572E-5	30.008537	6
TATGCCG	595	0.0	29.872385	43
TTAGGGA	70	2.8630893E-8	28.936804	4
GTATGCC	615	0.0	28.900925	42
CGTATGC	620	0.0	28.667854	41
CTCGTAT	620	0.0	28.667854	39
TGTGGAC	630	0.0	28.569931	30
ACCTGTG	625	0.0	28.438509	27
CGAGACC	625	0.0	28.438509	23