H23LNBCXX_l01n01_bir_0113_pc_33.3510000004535a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_33.3510000004535a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	134031
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGTC	8254	6.158276816557364	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGT	1712	1.2773164417187068	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCG	609	0.4543724959151241	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	187	0.1395199617998821	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	159	0.1186292723325201	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	147	0.10967611970365064	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	142	0.10594563944162172	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGACG	20	6.9998007E-4	45.01456	5
TGACCAC	20	7.012691E-4	44.99776	36
TTGACCA	20	7.012691E-4	44.99776	35
CCCATAA	20	7.012691E-4	44.99776	24
TGCCGTC	975	0.0	44.07473	45
TAGACGG	25	0.0020971522	36.011646	6
GGGTATA	25	0.0020971522	36.011646	1
ACATAAT	25	0.0020971522	36.011646	1
CTTCGTG	25	0.0021009997	35.998207	25
TGCCTCT	25	0.0021009997	35.998207	20
CATCGAT	25	0.0021009997	35.998207	18
ATTGACC	25	0.0021009997	35.998207	34
ATGCCGT	1195	0.0	35.960552	44
TATGCCG	1265	0.0	33.970642	43
ATCTCGT	1265	0.0	33.792786	37
CGTATGC	1275	0.0	33.70421	41
CTCGTAT	1275	0.0	33.70421	39
TCTCGTA	1270	0.0	33.65974	38
GTATGCC	1280	0.0	33.572548	42
GTGATCT	1275	0.0	33.527744	34