H23LNBCXX_l01n01_bir_0113_pc_3.35100000044fa1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_3.35100000044fa1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33986
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTC	9719	28.597069381510032	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGT	728	2.1420584946742776	RNA PCR Primer, Index 44 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCT	327	0.962160889778144	RNA PCR Primer, Index 44 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCG	237	0.6973459659859942	No Hit
ATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCTTC	190	0.5590537280056495	RNA PCR Primer, Index 37 (95% over 23bp)
TATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCTT	98	0.28835402812922967	RNA PCR Primer, Index 37 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1055	40.7346	45
AGCCCAC	1145	37.72926	17
CCACGAG	1145	37.72926	20
GCCCACG	1150	37.565216	18
GAGCCCA	1150	37.565216	16
CACGAGA	1150	37.565216	21
CCCACGA	1150	37.565216	19
ACGAGAC	1150	37.565216	22
CGAGCCC	1155	37.402596	15
AGACCCT	1155	37.402596	25
TCCGAGC	1155	37.402596	13
CCTAGAA	1155	37.402596	29
CCCTAGA	1155	37.402596	28
ATGCCGT	1150	37.369564	44
TAGAATA	1150	37.369564	31
TCTCGTA	1145	37.336246	38
TATCTCG	1140	37.30263	36
ATATCTC	1140	37.30263	35
ACCCTAG	1160	37.24138	27
CCGAGCC	1160	37.24138	14