H23LNBCXX_l01n01_bir_0113_pc_14.351000000450fd.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_14.351000000450fd.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	371654
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	8462	2.276848897092457	RNA PCR Primer, Index 45 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGT	1970	0.5300629079735453	No Hit
GAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCT	574	0.15444472547046445	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTA	570	0.1533684556065588	No Hit
TACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTA	489	0.13157399086246885	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	950	43.811073	45
ATGCCGT	1180	35.271626	44
CGTATGC	1200	34.49629	41
GTATGCC	1200	34.49629	42
TATGCCG	1215	34.25557	43
CTCGTAT	1205	33.79304	39
TCGTATG	1205	33.79304	40
GACGTTC	1220	33.750908	26
CACGAGA	1220	33.750908	21
CGAGACG	1230	33.659443	23
ACGTTCA	1235	33.340977	27
ACGAGAC	1235	33.340977	22
TCTCGTA	1225	33.241318	38
ATCTCGT	1230	33.106194	37
CGTTCAT	1245	33.073177	28
CCCACGA	1250	32.936455	19
AGACGTT	1260	32.85803	25
ATTAATC	1255	32.809647	33
AATCTCG	1240	32.657776	36
CCACGAG	1275	32.29064	20