H23LNBCXX_l01n01_bir_0113_pc_11.35100000045090.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pc_11.35100000045090.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347309
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	10374	2.986965497582844	RNA PCR Primer, Index 45 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGT	1578	0.45435044873585195	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	397	0.11430743228652296	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	383	0.11027643971218712	No Hit
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCG	379	0.10912472754809117	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1020	38.82204	45
ATGCCGT	1125	35.19865	44
CGTATGC	1150	34.237816	41
CTCGTAT	1145	34.190826	39
AGACGTT	1165	34.18324	25
TATGCCG	1160	34.13662	43
ATTAATC	1155	34.0896	33
GACGTTC	1170	33.844856	26
CGTTCAT	1165	33.79699	28
CGAGACG	1165	33.79699	23
TTCATTA	1175	33.700836	30
TCTCGTA	1165	33.603863	38
CATTAAT	1175	33.509354	32
GTATGCC	1175	33.509354	42
TCGTATG	1175	33.509354	40
AATCTCG	1175	33.31787	36
GTTCATT	1190	33.086967	29
ATCTCGT	1185	33.036705	37
TCATTAA	1200	32.998734	31
ACGTTCA	1195	32.948524	27