H23LNBCXX_l01n01_bir_0113_pb_96.35100000044f44.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pb_96.35100000044f44.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34107
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	8912	26.129533526841996	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGT	685	2.008385375436127	RNA PCR Primer, Index 41 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTTC	390	1.1434602867446564	RNA PCR Primer, Index 34 (95% over 23bp)
TTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	317	0.9294279766616823	RNA PCR Primer, Index 41 (95% over 23bp)
TATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTT	141	0.4134048728999912	RNA PCR Primer, Index 34 (95% over 22bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	126	0.3694256311021198	No Hit
CTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	43	0.12607382648723134	RNA PCR Primer, Index 41 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	36	0.10555018031489136	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1030	0.0	41.94038	45
CCGTCTT	35	6.0732527E-6	38.57017	44
ATGCCGT	1120	0.0	38.57017	44
CGTCTTC	35	6.0732527E-6	38.57017	45
ATCTCGT	1145	0.0	37.53153	37
GGCATCT	1140	0.0	37.49878	34
GCATCTC	1140	0.0	37.49878	35
TATGCCG	1155	0.0	37.40138	43
TCTCGTA	1155	0.0	37.40138	38
TCGTATG	1155	0.0	37.40138	40
CTCGTAT	1155	0.0	37.40138	39
CATCTCG	1150	0.0	37.368347	36
GTATGCC	1160	0.0	37.240166	42
CGTATGC	1160	0.0	37.240166	41
GAGACTC	1160	0.0	37.240166	24
ACGAGAC	1155	0.0	37.20658	22
CGAGCCC	1155	0.0	37.20658	15
AGACTCG	1155	0.0	37.20658	25
GACTCGA	1155	0.0	37.20658	26
AGCCCAC	1150	0.0	37.172703	17