H23LNBCXX_l01n01_bir_0113_pb_94.35100000044f00.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pb_94.35100000044f00.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2412
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	672	27.860696517412936	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGT	42	1.7412935323383085	RNA PCR Primer, Index 41 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	26	1.077943615257048	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGTCATCTCGTATGCCGTC	5	0.20729684908789386	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACGGATCTCGTATGCCGTCT	4	0.16583747927031509	No Hit
TTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	4	0.16583747927031509	RNA PCR Primer, Index 41 (95% over 23bp)
GGTATCAACGCAGAGTACGGGGTGGTATCCTGTCTCTTATACACATCTCCG	3	0.12437810945273632	No Hit
GTGTGTTCCCGACTCTCATTGGCAGGATAGGAGCAAAGATTATGCCTGTCT	3	0.12437810945273632	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGCCGTCATCTCGTATGCCGTC	3	0.12437810945273632	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGACAGCATCTCGTATGCCGTC	3	0.12437810945273632	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	60	44.999996	45
ATGCCGT	65	41.538464	44
ATCTCGT	75	39.0	37
CATCTCG	75	39.0	36
TCTCGTA	75	39.0	38
CTCGTAT	75	39.0	39
GTATGCC	70	38.57143	42
TATGCCG	70	38.57143	43
CGTATGC	70	38.57143	41
TCGTATG	70	38.57143	40
CTCGACG	80	36.562504	28
AGCCCAC	80	36.562504	17
ACTCGAC	80	36.562504	27
GGCATCT	80	36.562504	34
GCCCACG	80	36.562504	18
TCGACGG	80	36.562504	29
CCACGAG	80	36.562504	20
GACGGCA	80	36.562504	31
CACGAGA	80	36.562504	21
CCCACGA	80	36.562504	19