H23LNBCXX_l01n01_bir_0113_pb_93.35100000044ed8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pb_93.35100000044ed8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28108
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	2463	8.762629856268678	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGT	302	1.0744272093354206	RNA PCR Primer, Index 41 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	82	0.2917318912765049	RNA PCR Primer, Index 41 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTTC	50	0.17788529955884447	RNA PCR Primer, Index 34 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	47	0.16721218158531378	No Hit
TATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTT	29	0.10317347374412977	RNA PCR Primer, Index 34 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	310	39.19045	45
CTCCGAG	335	36.26579	12
TATGCCG	340	35.732468	43
CATCTCG	340	35.732468	36
TCTCGTA	340	35.732468	38
TCGTATG	340	35.732468	40
TCTCCGA	340	35.732468	11
CGAGACT	340	35.732468	23
AGACTCG	340	35.732468	25
GACTCGA	340	35.732468	26
CTCGTAT	340	35.732468	39
CTCGACG	335	35.5942	28
GGCATCT	335	35.5942	34
TCGACGG	335	35.5942	29
CCACGAG	335	35.5942	20
GACGGCA	335	35.5942	31
CCCACGA	335	35.5942	19
CGAGCCC	335	35.5942	15
CCGAGCC	335	35.5942	14
CGGCATC	335	35.5942	33