H23LNBCXX_l01n01_bir_0113_pb_80.35100000044d39.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pb_80.35100000044d39.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47088
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTC	16768	35.60992184845396	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGT	2567	5.451495073054706	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCG	363	0.7708970438328236	No Hit
TTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCT	295	0.6264865783214407	No Hit
ATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCTTC	272	0.5776418620455317	Illumina PCR Primer Index 7 (95% over 22bp)
TATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCTT	110	0.23360516479782537	Illumina PCR Primer Index 7 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACCCTGGACCATCTCGTATGCCGTC	70	0.1486578321440707	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCG	59	0.12529731566428814	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1705	42.755592	45
ATGCCGT	1970	36.88999	44
ATCTCGT	2005	36.358242	37
CATCTCG	1995	36.31493	36
TCTCGTA	2005	36.246025	38
CTCGTAT	2005	36.246025	39
CGAGCCC	2015	36.177807	15
TCCGAGC	2015	36.177807	13
CTCCGAG	2015	36.177807	12
AGCCCAC	2010	36.155865	17
CACGAGA	2010	36.155865	21
TCGTATG	2010	36.155865	40
ACGAGAC	2005	36.13381	22
CCATCTC	2005	36.13381	35
AGACTCT	2005	36.13381	25
GACCATC	2005	36.13381	33
GAGACTC	2005	36.13381	24
GACTCTG	2000	36.11165	26
GAGCCCA	2025	36.110256	16
ATCTCCG	1995	36.08937	10