H23LNBCXX_l01n01_bir_0113_pb_63.35100000044b2e.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pb_63.35100000044b2e.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	130735
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	42346	32.39071403985161	RNA PCR Primer, Index 39 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	5723	4.377557654797873	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCG	4853	3.712089341033388	No Hit
TTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTCT	215	0.16445481317168317	RNA PCR Primer, Index 39 (100% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	4550	44.056694	45
ATGCCGT	5175	38.692364	44
TATGCCG	5660	35.37685	43
GTTATAC	5645	35.32495	30
GACTGTT	5685	35.31394	26
ACGAGAC	5715	35.31196	22
AGCCCAC	5730	35.298046	17
TATACAT	5650	35.293686	32
CTCGTAT	5630	35.285633	39
TACATCT	5630	35.285633	34
ACTGTTA	5690	35.282906	27
CACGAGA	5720	35.281094	21
CCCACGA	5720	35.281094	19
CCACGAG	5720	35.281094	20
TCTCGTA	5625	35.277	38
ATACATC	5635	35.267815	33
GAGACTG	5700	35.26049	24
GCCCACG	5730	35.25878	18
ATCTCGT	5635	35.254322	37
CGTATGC	5655	35.24899	41