H23LNBCXX_l01n01_bir_0113_pb_62.35100000044b04.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pb_62.35100000044b04.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	154481
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	70602	45.702707776360846	RNA PCR Primer, Index 39 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	10488	6.789184430447757	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCG	6240	4.039331697749238	No Hit
TTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTCT	415	0.26864145105223297	RNA PCR Primer, Index 39 (100% over 21bp)
ATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTCTTC	162	0.10486726523002829	RNA PCR Primer, Index 39 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGATAAA	20	7.0158066E-4	44.99806	24
TGCCGTC	7295	0.0	44.35038	45
ATGCCGT	8490	0.0	38.107895	44
CTTTATA	25	0.0020985843	36.0101	2
CTGCTTG	25	0.0021019238	35.998444	24
CATCTCG	9090	0.0	35.295506	36
ATACATC	9110	0.0	35.29211	33
TATGCCG	9150	0.0	35.285362	43
CTCGTAT	9095	0.0	35.251366	39
TCTCGTA	9090	0.0	35.246002	38
TACATCT	9110	0.0	35.242718	34
CGTATGC	9150	0.0	35.236183	41
TCGTATG	9125	0.0	35.234093	40
ATCTCGT	9100	0.0	35.231995	37
CACGAGA	9200	0.0	35.21587	21
CCACGAG	9195	0.0	35.210552	20
CCCACGA	9190	0.0	35.205227	19
GTATGCC	9165	0.0	35.203064	42
TATACAT	9165	0.0	35.203064	32
ACGAGAC	9205	0.0	35.196743	22