H23LNBCXX_l01n01_bir_0113_pb_46.351000000448f8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pb_46.351000000448f8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2554
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGTC	1073	42.012529365700864	RNA PCR Primer, Index 20 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGT	142	5.559906029757244	No Hit
TTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGTCT	25	0.9788566953797965	No Hit
ATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGTCTTC	21	0.822239624119029	RNA PCR Primer, Index 20 (95% over 24bp)
CTCTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCG	18	0.7047768206734534	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGTTGACATCTCGTATGCCGTC	9	0.3523884103367267	No Hit
TATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGTCTT	6	0.23492560689115116	RNA PCR Primer, Index 20 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCGTC	5	0.19577133907595928	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCG	4	0.15661707126076743	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCG	4	0.15661707126076743	No Hit
CTTATACACATCTCCGAGCACACGAGACCTGTGGACATCTCGTATGCCGTC	3	0.11746280344557558	No Hit
CTTATACACATCTCCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGT	3	0.11746280344557558	No Hit
CTTATACACATCTCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGTCT	3	0.11746280344557558	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	145	41.896553	45
TATACAC	160	39.375	3
TTATACA	160	39.375	2
CTTATAC	160	39.375	1
ATACACA	170	37.058823	4
TACACAT	165	36.81818	5
GTATGCC	170	35.735294	42
ATCTCGT	170	35.735294	37
CACATCT	170	35.735294	7
TATGCCG	170	35.735294	43
CATCTCG	170	35.735294	36
CATCTCC	170	35.735294	9
ACACATC	170	35.735294	6
TCTCGTA	170	35.735294	38
ATGCCGT	170	35.735294	44
CGTATGC	170	35.735294	41
TCGTATG	170	35.735294	40
CTCGTAT	170	35.735294	39
ATCTCCG	165	35.454544	10
CCTGTGG	165	35.454544	28