H23LNBCXX_l01n01_bir_0113_pa_90.35100000044284.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pa_90.35100000044284.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20091
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCGTC	6641	33.054601562888855	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCGT	701	3.489124483599622	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCG	240	1.1945647304763327	No Hit
ATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCGTCTTC	85	0.42307500871036785	Illumina PCR Primer Index 7 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCG	35	0.17420735652779853	No Hit
TATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCGTCTT	30	0.1493205913095416	Illumina PCR Primer Index 7 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCGTCT	28	0.13936588522223883	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACCCTGGATAATCTCGTATGCCG	23	0.11447912000398187	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	840	42.05357	45
ATGCCGT	895	39.469273	44
ATCTCCG	905	39.28177	10
TCTCCGA	910	39.065933	11
CTCCGAG	915	38.85246	12
CATCTCC	925	38.43243	9
CACATCT	935	38.26203	7
ACACATC	935	38.26203	6
TCCGAGC	930	38.225807	13
GATAATC	925	38.18919	33
ATAATCT	925	38.18919	34
GGATAAT	925	38.18919	32
ACGAGAC	925	38.18919	22
CGAGACC	925	38.18919	23
AATCTCG	920	38.152172	36
CACGAGA	920	38.152172	21
CCCACGA	920	38.152172	19
TCTCGTA	920	38.152172	38
TAATCTC	920	38.152172	35
CGTATGC	920	38.152172	41