H23LNBCXX_l01n01_bir_0113_pa_62.35100000043f03.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pa_62.35100000043f03.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	374551
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTC	193877	51.762510312347324	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGT	59661	15.92867192985735	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCG	19828	5.293805115992215	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACTGTCTCTTATACA	525	0.1401678276122611	No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATACA	479	0.12788645605004392	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCTGTCTCTTATAC	458	0.12227974294555348	No Hit
GTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATAC	445	0.11880892054753557	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCAACGC	30	2.1600226E-6	45.004677	28
ACCAACG	30	2.1600226E-6	45.004677	27
CAACGCG	30	2.1600226E-6	45.004677	29
GGCGCAT	25	3.88337E-5	45.004673	32
AGGCGCA	25	3.88337E-5	45.004673	31
AAGGCGC	25	3.88337E-5	45.004673	30
GCGCATC	25	3.88337E-5	45.004673	33
CAAGGCC	20	7.023595E-4	45.004673	29
ACGCGAA	35	1.208009E-7	45.004673	31
AATGATC	25	3.88337E-5	45.004673	25
CAATGAG	20	7.0282165E-4	44.99867	5
ATCTCAG	20	7.0282165E-4	44.99867	10
TATGCCC	30	2.1620108E-6	44.998665	45
TAGCTTG	25	3.886434E-5	44.998665	14
GCTTGCG	25	3.886434E-5	44.998665	16
TTGCGTA	25	3.886434E-5	44.998665	18
TGCCGTC	20075	0.0	44.662437	45
GCCGTCT	145	0.0	41.895306	45
CGCGAAT	40	3.447094E-7	39.37909	32
AACGCGA	40	3.447094E-7	39.37909	30