H23LNBCXX_l01n01_bir_0113_pa_57.35100000043e61.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_0113_pa_57.35100000043e61.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34974
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTC	7543	21.567450105792872	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGT	980	2.802081546291531	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCG	265	0.7577057242523018	No Hit
ATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTCTTC	126	0.3602676273803397	RNA PCR Primer, Index 46 (95% over 22bp)
GAAGAGAATCGATTAGAATCGAAATGAAAAGAATCGTATTGAATCGAATCG	56	0.16011894550237318	No Hit
TTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTCT	47	0.13438554354663465	No Hit
TATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTCTT	46	0.1315262766626637	RNA PCR Primer, Index 46 (95% over 21bp)
GATATACATCGTGCAATGAACCAAGAAGAAAGACTCAGTAGATACCAACTG	45	0.12866700977869275	No Hit
TTGTGTATCCTTTTGCTTGTTTTTTGTTGTGATAGTCTTTGAGTTACTCAA	43	0.12294847601075085	No Hit
GTTTTGATTAGTAAGGACTGAAACTATGGAGTCATCTTTTTTCACATCATT	41	0.11722994224280894	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCG	41	0.11722994224280894	No Hit
TATCAAGCTCTTTGTAGATTTCACACTAACCGTCTTGGATACTTTTGTTGT	37	0.10579287470692514	No Hit
GTGTTTATTTCCGATATTCGTAACTGTAAAAGTAAAGAAGCCGAAAGCAAA	35	0.10007434093898325	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	825	0.0	42.0	45
CGTCTTC	35	6.0762686E-6	38.571426	45
ATGCCGT	950	0.0	36.473682	44
CCCACGA	975	0.0	35.53846	19
CGAGACC	975	0.0	35.53846	23
AGACCAA	975	0.0	35.53846	25
GACCAAG	975	0.0	35.53846	26
GAGACCA	975	0.0	35.53846	24
CGTATGC	970	0.0	35.489693	41
TCGTATG	970	0.0	35.489693	40
ATCTCGT	965	0.0	35.440414	37
AGCCCAC	980	0.0	35.357143	17
GCCCACG	980	0.0	35.357143	18
TATGCCG	980	0.0	35.357143	43
ACCAAGG	980	0.0	35.357143	27
CACGAGA	980	0.0	35.357143	21
CCAAGGC	980	0.0	35.357143	28
GTATGCC	975	0.0	35.30769	42
CTCGTAT	975	0.0	35.30769	39
TCTCGTA	970	0.0	35.257732	38