FastQCFastQC Report
Wed 24 Jun 2020
H22C3BGXG_n01_ChiP-zmm16.shoot-line14-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH22C3BGXG_n01_ChiP-zmm16.shoot-line14-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7398976
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT11450.09.78150947
ACGTCTG45900.08.76892970
CGTATGC12500.08.39987144
CACGTCT50950.07.831086669
ACACGTC57100.07.539288570
TATGCCG12604.9112714E-117.22211146
GCACACG73800.06.82916470
CGTCTGA45400.06.47567270
CACACGT66200.06.450052369
AGATCGG203950.06.263694370
GATCGGA194050.06.168418470
ATCGGAA173450.06.01316869
TCGGAAG173800.05.98092170
TCTGAAC45250.05.878362770
AGCACAC97050.05.698006670
AGAGCAC117700.05.679607470
CGGAAGA164900.05.66698470
CTCGTAT13857.949784E-75.559481642
GAGCACA106700.05.477891469
ACCGGAT20802.0736479E-105.38456935
Produced by FastQC (version 0.11.5)