FastQCFastQC Report
Wed 24 Jun 2020
H22C3BGXG_n01_ChiP-zmm16.shoot-line14-input1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH22C3BGXG_n01_ChiP-zmm16.shoot-line14-input1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8267248
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC12851.8189894E-127.626305644
CGTCTGA143900.07.53980670
ACGTCTG153850.07.37066670
CACGTCT175350.06.706451470
TCTGAAC123300.06.698972770
ACTCCAG74050.06.617016370
TCCAGTC61400.06.612244670
GTCTGAA136600.06.61040870
GCACACG234500.06.55210770
ACACGTC189500.06.4457870
CACACGT212250.06.39798670
CTGAACT117700.06.30403670
CAGTCAC52100.06.1131270
CTCCAGT74300.06.076593470
AGCACAC277250.06.02151970
CCAGTCA58200.05.83321570
ATGCCGT16001.2300006E-85.68738547
AGTCACC49650.05.568870570
GAGCACA304150.05.4774569
AACTCCA109100.05.38944270
Produced by FastQC (version 0.11.5)