FastQCFastQC Report
Wed 24 Jun 2020
H22C3BGXG_n01_ChiP-zmm16.shoot-line12-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH22C3BGXG_n01_ChiP-zmm16.shoot-line12-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8444989
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC33600.07.291521570
CACGTCT31350.06.921712470
GCACACG41550.06.401797370
CACACGT39300.06.323028669
AGATCGG118350.06.032832670
ACGTCTG26450.05.822190369
ATCGGAA102650.05.455322370
CGTCTGA30500.05.393335370
GATCGGA113500.05.273022770
TCGGAAG107600.05.1718370
CGGAAGA103350.05.07972570
Produced by FastQC (version 0.11.5)