FastQCFastQC Report
Wed 24 Jun 2020
H22C3BGXG_n01_ChiP-zmm16.root-line15-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH22C3BGXG_n01_ChiP-zmm16.root-line15-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9052478
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCACGT13001.8189894E-127.53855329
AGTCACG14201.6370905E-116.901530328
CGTATGC14151.05501385E-106.67830546
AGATCGG72900.06.04925670
TGAAACG17901.3278623E-105.86579935
TATGCCG15606.9248927E-95.833339748
TCACGTG16453.8307917E-95.74475130
ATGCCGT15901.0668373E-85.72327749
ACACGTC26650.05.64716169
TCGTATG19301.6007107E-105.621643545
CACGTGA18308.172719E-95.35507931
ATCGGAA67150.05.05573968
ACGTCTG22955.675247E-105.03257470
CTCGTAT16701.011027E-65.029834744
Produced by FastQC (version 0.11.5)