FastQCFastQC Report
Wed 24 Jun 2020
H22C3BGXG_n01_ChiP-zmm16.root-line14-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH22C3BGXG_n01_ChiP-zmm16.root-line14-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7904794
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGT15700.013.37557247
TATGCCG15750.012.66645446
CGTATGC16700.012.15548644
CTCGTAT16300.011.380177542
TCGTATG21050.010.14234843
GTATGCC24400.08.89329345
ACACGTC85950.08.38845770
TCTCGTA23900.07.907817441
GCCGTCT27600.07.73542749
TGCCGTC29250.07.658040548
CACACGT97550.07.53447269
TAATCTC28500.07.49110338
CACGTCT76500.07.228636770
ACGTCTG66800.07.17802470
AATCTCG30050.07.10470739
GCACACG108550.06.99665970
CCAACTA32700.06.85003833
CCGTCTT30750.06.829240350
CGTCTGA66600.06.779165770
ACTAATC29950.06.777849736
Produced by FastQC (version 0.11.5)