FastQCFastQC Report
Wed 24 Jun 2020
H22C3BGXG_n01_ChiP-zmm16.root-line14-input1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH22C3BGXG_n01_ChiP-zmm16.root-line14-input1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8475154
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT15400.08.18167544
ATGCCGT15850.08.17020549
CACGTCT74250.08.1547470
TATCTCG17200.07.732423341
CACACGT93400.07.71935270
TATGCCG15850.07.507755848
ACACGTC80700.07.37285769
GCACACG104750.07.250470670
CGTATGC17500.06.99987846
ACGTCTG63500.06.61405870
CGTCTGA66400.06.21977169
TCGTATG20150.06.079298545
AGCACAC135700.06.03526770
ATCGGAA244050.05.937204470
CGGAAGA234500.05.910344670
GAGCACA152300.05.7681270
TCGGAAG242250.05.75015869
TCTGAAC59850.05.73089470
GTCTGAA71000.05.7182170
TAGATCG84000.05.66656870
Produced by FastQC (version 0.11.5)