FastQCFastQC Report
Wed 24 Jun 2020
H22C3BGXG_n01_ChiP-zmm16.root-line12-input2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH22C3BGXG_n01_ChiP-zmm16.root-line12-input2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9426394
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG74300.05.84102570
TCACGTA14652.3263474E-65.256108330
TATGCCG16701.8406354E-75.23937846
CGTAGAG16104.770791E-75.217249433
ATGCCGT14451.0073609E-55.086366747
CGTATGC15154.3992677E-65.082369344
GATCGGA77400.05.01924370
Produced by FastQC (version 0.11.5)