[2021-06-04 02:46:50,895] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-06-04 02:46:50,895] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-06-04 02:46:50,895] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-06-04 02:46:50,897] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-06-04 02:46:50,897] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-06-04 02:46:50,897] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H222TAFX3/merged [2021-06-04 02:46:52,262] multiqc [WARNING] MultiQC Version v1.10.1 now available! [2021-06-04 02:46:52,262] multiqc [INFO ] This is MultiQC v1.9 [2021-06-04 02:46:52,262] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H222TAFX3/merged [2021-06-04 02:46:52,263] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H222TAFX3/merged [2021-06-04 02:46:52,263] multiqc [INFO ] Template : default [2021-06-04 02:46:52,263] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-06-04 02:46:52,263] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H222TAFX3/merged [2021-06-04 02:46:52,264] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-06-04 02:46:52,264] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-7344111/tmpgkdkupdt [2021-06-04 02:46:52,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-4_fastqc.html [2021-06-04 02:46:52,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded 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H222TAFX3_n02_vk13-9_fastqc.html [2021-06-04 02:46:52,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-06-04 02:46:52,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-06-04 02:46:52,682] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-06-04 02:46:52,682] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-06-04 02:46:52,682] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-06-04 02:46:52,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-06-04 02:46:52,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-06-04 02:46:53,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-12_fastqc.html [2021-06-04 02:46:53,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-12_fastqc.html [2021-06-04 02:46:53,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-10_fastqc.html [2021-06-04 02:46:53,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-10_fastqc.html [2021-06-04 02:46:53,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-6_fastqc.html [2021-06-04 02:46:53,655] multiqc [DEBUG ] File ignored by longranger/invocation 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filesize limit: H222TAFX3_n01_vk13-4_fastqc.html [2021-06-04 02:46:53,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-18_fastqc.html [2021-06-04 02:46:53,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-18_fastqc.html [2021-06-04 02:46:54,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-17_fastqc.html [2021-06-04 02:46:54,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-17_fastqc.html [2021-06-04 02:46:54,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-7_fastqc.html [2021-06-04 02:46:54,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-7_fastqc.html [2021-06-04 02:46:54,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-19_fastqc.html [2021-06-04 02:46:54,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-19_fastqc.html [2021-06-04 02:46:54,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_undetermined_fastqc.html [2021-06-04 02:46:54,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_undetermined_fastqc.html [2021-06-04 02:46:54,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-20_fastqc.html [2021-06-04 02:46:54,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-20_fastqc.html [2021-06-04 02:46:54,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-16_fastqc.html [2021-06-04 02:46:54,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-16_fastqc.html [2021-06-04 02:46:54,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-7_fastqc.html [2021-06-04 02:46:54,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-7_fastqc.html [2021-06-04 02:46:54,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-18_fastqc.html [2021-06-04 02:46:54,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-18_fastqc.html [2021-06-04 02:46:54,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-17_fastqc.html [2021-06-04 02:46:54,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-17_fastqc.html [2021-06-04 02:46:54,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-15_fastqc.html [2021-06-04 02:46:54,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-15_fastqc.html [2021-06-04 02:46:54,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-11_fastqc.html [2021-06-04 02:46:54,720] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-11_fastqc.html [2021-06-04 02:46:54,808] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-2_fastqc.html [2021-06-04 02:46:54,811] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-2_fastqc.html [2021-06-04 02:46:54,907] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-3_fastqc.html [2021-06-04 02:46:54,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-3_fastqc.html [2021-06-04 02:46:54,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-16_fastqc.html [2021-06-04 02:46:54,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-16_fastqc.html [2021-06-04 02:46:55,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-1_fastqc.html [2021-06-04 02:46:55,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-1_fastqc.html [2021-06-04 02:46:55,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-11_fastqc.html [2021-06-04 02:46:55,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-11_fastqc.html [2021-06-04 02:46:55,306] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-15_fastqc.html [2021-06-04 02:46:55,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-15_fastqc.html [2021-06-04 02:46:55,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-13_fastqc.html [2021-06-04 02:46:55,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-13_fastqc.html [2021-06-04 02:46:55,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-9_fastqc.html [2021-06-04 02:46:55,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-9_fastqc.html [2021-06-04 02:46:55,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-20_fastqc.html [2021-06-04 02:46:55,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-20_fastqc.html [2021-06-04 02:46:55,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-2_fastqc.html [2021-06-04 02:46:55,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-2_fastqc.html [2021-06-04 02:46:55,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-1_fastqc.html [2021-06-04 02:46:55,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-1_fastqc.html [2021-06-04 02:46:55,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-8_fastqc.html [2021-06-04 02:46:55,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-8_fastqc.html [2021-06-04 02:46:55,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-8_fastqc.html [2021-06-04 02:46:55,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-8_fastqc.html [2021-06-04 02:46:55,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-5_fastqc.html [2021-06-04 02:46:55,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-5_fastqc.html [2021-06-04 02:46:55,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-3_fastqc.html [2021-06-04 02:46:55,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-3_fastqc.html [2021-06-04 02:46:55,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-13_fastqc.html [2021-06-04 02:46:55,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-13_fastqc.html [2021-06-04 02:46:56,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_undetermined_fastqc.html [2021-06-04 02:46:56,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_undetermined_fastqc.html [2021-06-04 02:46:56,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-12_fastqc.html [2021-06-04 02:46:56,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-12_fastqc.html [2021-06-04 02:46:56,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-14_fastqc.html [2021-06-04 02:46:56,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n01_vk13-14_fastqc.html [2021-06-04 02:46:56,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-14_fastqc.html [2021-06-04 02:46:56,288] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H222TAFX3_n02_vk13-14_fastqc.html [2021-06-04 02:46:56,914] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-06-04 02:46:56,916] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-06-04 02:46:56,934] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 21 samples (table) [2021-06-04 02:46:56,944] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-06-04 02:46:56,945] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-06-04 02:46:56,951] multiqc [DEBUG ] No samples found: conpair [2021-06-04 02:46:56,957] multiqc [DEBUG ] No samples found: peddy [2021-06-04 02:46:56,962] multiqc [DEBUG ] No samples found: somalier [2021-06-04 02:46:56,967] multiqc [DEBUG ] No samples found: methylQA [2021-06-04 02:46:56,976] multiqc [DEBUG ] No samples found: mosdepth [2021-06-04 02:46:56,981] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-06-04 02:46:56,985] multiqc [DEBUG ] No samples found: qualimap [2021-06-04 02:46:56,991] multiqc [DEBUG ] No samples found: preseq [2021-06-04 02:46:56,996] multiqc [DEBUG ] No samples found: quast [2021-06-04 02:46:57,002] multiqc [DEBUG ] No samples found: qorts [2021-06-04 02:46:57,007] multiqc [DEBUG ] No samples found: rna_seqc [2021-06-04 02:46:57,012] multiqc [DEBUG ] No samples found: rockhopper [2021-06-04 02:46:57,017] multiqc [DEBUG ] No samples found: rsem [2021-06-04 02:46:58,567] multiqc [DEBUG ] No samples found: rseqc [2021-06-04 02:46:58,577] multiqc [DEBUG ] No samples found: busco [2021-06-04 02:46:58,583] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-06-04 02:46:58,588] multiqc [DEBUG ] No samples found: disambiguate [2021-06-04 02:46:58,594] multiqc [DEBUG ] No samples found: supernova [2021-06-04 02:46:58,643] multiqc [DEBUG ] No samples found: deeptools [2021-06-04 02:46:58,654] multiqc [DEBUG ] No samples found: sargasso [2021-06-04 02:46:58,661] multiqc [DEBUG ] No samples found: verifybamid [2021-06-04 02:46:58,669] multiqc [DEBUG ] No samples found: mirtrace [2021-06-04 02:46:58,676] multiqc [DEBUG ] No samples found: happy [2021-06-04 02:46:58,683] multiqc [DEBUG ] No samples found: mirtop [2021-06-04 02:46:58,692] multiqc [DEBUG ] No samples found: homer [2021-06-04 02:46:58,698] multiqc [DEBUG ] No samples found: macs2 [2021-06-04 02:46:58,703] multiqc [DEBUG ] No samples found: theta2 [2021-06-04 02:46:58,709] multiqc [DEBUG ] No samples found: snpeff [2021-06-04 02:46:58,724] multiqc [DEBUG ] No samples found: gatk [2021-06-04 02:46:58,733] multiqc [DEBUG ] No samples found: htseq [2021-06-04 02:46:58,741] multiqc [DEBUG ] No samples found: bcftools [2021-06-04 02:46:58,746] multiqc [DEBUG ] No samples found: featureCounts [2021-06-04 02:46:58,753] multiqc [DEBUG ] No samples found: fgbio [2021-06-04 02:46:58,773] multiqc [DEBUG ] No samples found: dragen [2021-06-04 02:46:58,780] multiqc [DEBUG ] No samples found: dedup [2021-06-04 02:46:58,790] multiqc [DEBUG ] No samples found: damageprofiler [2021-06-04 02:46:58,918] multiqc [DEBUG ] No samples found: biobambam2 [2021-06-04 02:46:58,927] multiqc [DEBUG ] No samples found: mtnucratio [2021-06-04 02:46:58,933] multiqc [DEBUG ] No samples found: picard [2021-06-04 02:46:58,939] multiqc [DEBUG ] No samples found: prokka [2021-06-04 02:46:58,944] multiqc [DEBUG ] No samples found: samblaster [2021-06-04 02:46:58,959] multiqc [DEBUG ] No samples found: samtools [2021-06-04 02:46:58,965] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-06-04 02:46:58,971] multiqc [DEBUG ] No samples found: bamtools [2021-06-04 02:46:58,976] multiqc [DEBUG ] No samples found: jellyfish [2021-06-04 02:46:58,990] multiqc [DEBUG ] No samples found: vcftools [2021-06-04 02:46:58,995] multiqc [DEBUG ] No samples found: longranger [2021-06-04 02:46:59,001] multiqc [DEBUG ] No samples found: stacks [2021-06-04 02:46:59,007] multiqc [DEBUG ] No samples found: varscan2 [2021-06-04 02:46:59,024] multiqc [DEBUG ] No samples found: bbmap [2021-06-04 02:46:59,031] multiqc [DEBUG ] No samples found: bismark [2021-06-04 02:46:59,037] multiqc [DEBUG ] No samples found: biscuit [2021-06-04 02:46:59,043] multiqc [DEBUG ] No samples found: hicexplorer [2021-06-04 02:46:59,048] multiqc [DEBUG ] No samples found: hicup [2021-06-04 02:46:59,055] multiqc [DEBUG ] No samples found: hicpro [2021-06-04 02:46:59,065] multiqc [DEBUG ] No samples found: salmon [2021-06-04 02:46:59,076] multiqc [DEBUG ] No samples found: kallisto [2021-06-04 02:46:59,083] multiqc [DEBUG ] No samples found: slamdunk [2021-06-04 02:46:59,090] multiqc [DEBUG ] No samples found: star [2021-06-04 02:46:59,095] multiqc [DEBUG ] No samples found: hisat2 [2021-06-04 02:46:59,100] multiqc [DEBUG ] No samples found: tophat [2021-06-04 02:46:59,106] multiqc [DEBUG ] No samples found: bowtie2 [2021-06-04 02:46:59,111] multiqc [DEBUG ] No samples found: bowtie1 [2021-06-04 02:46:59,117] multiqc [DEBUG ] No samples found: snpsplit [2021-06-04 02:46:59,126] multiqc [DEBUG ] No samples found: kat [2021-06-04 02:46:59,133] multiqc [DEBUG ] No samples found: leehom [2021-06-04 02:46:59,138] multiqc [DEBUG ] No samples found: adapterRemoval [2021-06-04 02:46:59,143] multiqc [DEBUG ] No samples found: clipandmerge [2021-06-04 02:46:59,148] multiqc [DEBUG ] No samples found: cutadapt [2021-06-04 02:46:59,152] multiqc [DEBUG ] No samples found: flexbar [2021-06-04 02:46:59,158] multiqc [DEBUG ] No samples found: kaiju [2021-06-04 02:46:59,163] multiqc [DEBUG ] No samples found: kraken [2021-06-04 02:46:59,168] multiqc [DEBUG ] No samples found: malt [2021-06-04 02:46:59,173] multiqc [DEBUG ] No samples found: trimmomatic [2021-06-04 02:46:59,178] multiqc [DEBUG ] No samples found: sickle [2021-06-04 02:46:59,184] multiqc [DEBUG ] No samples found: skewer [2021-06-04 02:46:59,189] multiqc [DEBUG ] No samples found: sortmerna [2021-06-04 02:46:59,193] multiqc [DEBUG ] No samples found: biobloomtools [2021-06-04 02:46:59,199] multiqc [DEBUG ] No samples found: fastq_screen [2021-06-04 02:46:59,204] multiqc [DEBUG ] No samples found: afterqc [2021-06-04 02:46:59,210] multiqc [DEBUG ] No samples found: fastp [2021-06-04 02:47:01,567] multiqc.modules.fastqc.fastqc [INFO ] Found 42 reports [2021-06-04 02:47:02,443] multiqc [DEBUG ] No samples found: pycoqc [2021-06-04 02:47:02,449] multiqc [DEBUG ] No samples found: minionqc [2021-06-04 02:47:02,456] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-06-04 02:47:02,461] multiqc [DEBUG ] No samples found: clusterflow [2021-06-04 02:47:02,466] multiqc [DEBUG ] No samples found: bcl2fastq [2021-06-04 02:47:02,472] multiqc [DEBUG ] No samples found: interop [2021-06-04 02:47:02,478] multiqc [DEBUG ] No samples found: ivar [2021-06-04 02:47:02,483] multiqc [DEBUG ] No samples found: flash [2021-06-04 02:47:02,488] multiqc [DEBUG ] No samples found: seqyclean [2021-06-04 02:47:02,489] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-06-04 02:47:02,489] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-06-04 02:47:02,489] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-06-04 02:47:02,489] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-06-04 02:47:02,538] multiqc [INFO ] Compressing plot data [2021-06-04 02:47:03,353] multiqc [INFO ] Report : multiqc_report.html [2021-06-04 02:47:03,353] multiqc [INFO ] Data : multiqc_data [2021-06-04 02:47:03,353] multiqc [DEBUG ] Moving data file from '/state/partition1/job-7344111/tmpgkdkupdt/multiqc_data' to '/scratch/gencore/logs/html/H222TAFX3/merged/multiqc_data' [2021-06-04 02:47:03,575] multiqc [INFO ] MultiQC complete