FastQCFastQC Report
Wed 29 Jun 2022
temp_l01_n02_LC_CD017_FU1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenametemp_l01_n02_LC_CD017_FU1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56456
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAC1485526.312526569363754No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG1201021.273203911010345No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTGTTCGTCCAGAA1024518.14687544282273No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA620310.987317557035567No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCCTGAGCGTCAGTTATGTCCCAGGA44687.914127816352558No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG8831.5640498795522175No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAC7521.3320107694487744No Hit
CCTGTTCGCTACCCATGCTTTCGAGTCTCAGCGTCAGTTGCAGACCAGGT6241.1052855320957913No Hit
CCCTTTCGCTCCCCTGGCCTTCGTGCCTCAGCGTCAGTTAATGTCCAGGA4740.8395918945727646No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTTACAGACCAGAG1790.31706107411081197No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTACAGACCAGAC1710.30289074677625055No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTACAGACCAGAG1410.24975201927164517No Hit
CCTGTTCGCTACCCATGCTTTCGCGCCTCAGCGTCAGTTACAGACCAGAC1370.24266685560436446No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTGTTCGTCCAGAA1100.19484200085021963No Hit
CCTGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTGTTCGTCCAGAA980.1735865098483775No Hit
CCCGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAC860.15233101884653535No Hit
CCTGTTTGCTACCCACGCTTTCGAACCTCAGCGTCAGTTACAGACCAGAG830.14701714609607483No Hit
CCCGTTCGCTCCCCTCGCTTTCGCGCCTCAGCGTCAGTGTTCGTCCAGAA810.14347456426243446No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTGTTCGTCCAGAA790.1399319824287941No Hit
CCTGTTCGCTACCCATGCTTTCGAGCCTCAGCGTCAGTTTTCGTCCAGAA700.12399036417741251No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTATGTCCCAGGA680.12044778234377215No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAA660.11690520051013178No Hit
CCTGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA610.1080487459260309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)