FastQCFastQC Report
Mon 13 May 2019
CCY3TACXX_l08_n01_S3S9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3TACXX_l08_n01_S3S9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences284647
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCAGC1200.00164739513.12889745
CAACGCA1300.003005210512.11898143
CAGCGTA1700.001830961810.58765620
GCAAGCC1500.00875342110.49942635
AAACGCA2050.0085939548.78000831
Produced by FastQC (version 0.11.5)