FastQCFastQC Report
Tue 17 Dec 2019
CCY3RACXX_l08_n02_QG2990.2fGM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCCY3RACXX_l08_n02_QG2990.2fGM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18034862
Sequences flagged as poor quality0
Sequence length101
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGGG53800.07.43194694-95
AAAAAAA933200.06.22263294-95
GTATCAT301450.06.04584794-95
CGTATCA344700.05.455864494-95
CCGTATC379550.05.12027994-95
TATCATT342550.05.089717494-95
Produced by FastQC (version 0.11.5)